Chapter 15 HiC

15.1 Introduction to Chromatin Interaction and Organization

15.2 Methods to Investigate 3D Genome Organization

15.3 Topologically Associating Domains

15.4 TAD Function and Loop Anchors

15.5 Chromatin Compartments

15.6 Computational Methods to Call Chromatin Loops

15.7 Variations of Chromatin Interaction Technologies

15.8 Resources for Exploring 3D Genomes

15.9 Lab 7

15.9.1 BS-seq and Bismark Tutorial

15.9.2 Tutorial on Associating DNA Methylation with Expression

15.9.3 HiC Analysis Tutorial