Chapter 13 Histone Modifications , Chromatin Accessibility

13.1 Nucleosome Positioning

13.2 Introduction to Histone Modifications

13.3 Infer Transcription Factor Binding from Histone Mark Dynamics

13.4 Using Histone Marks to Infer Gene Functions

13.5 Introduction to DNase-seq and ATAC-seq

13.6 Infer TF from Differential Genes Using LISA

13.7 Caution on DNase/ATAC-seq footprint analysis

13.8 Summary of Epigenetics and Chromatin

13.9 Lab 6

13.9.1 ChIP-seq Expression Integration

13.9.2 Cistrome-GO Tutorial

13.9.3 ATAC-seq Analysis and LISA Tutorial